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HyeongJin Roh

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Researcher
Telephone: 92046359
Department: Smittespredning og sykdom

Curriculum Vitae

My research interest is to understand key virulence factors of pathogens and defense mechanisms of the host based on state-of-the-art multi-omics methods (genomics, transcriptomics and proteomics) in a study model of host-pathogen interactions. Currently, I am focusing on excavating WELFARE BIOMARKERS: identification of biomarkers associated with fish health and welfare targeting for non-lethal and minimal invasive bio-samples (e.g., mucus, scales) based on multi-omics (Transcriptomics, Proteomics, and Metabolomics approaches).
Publications

Publications

Academic articles

2024

Nanopore sequencing provides snapshots of the genetic variation within salmonid alphavirus-3 (SAV3) during an ongoing infection in Atlantic salmon (Salmo salar) and brown trout (Salmo trutta)

HyeongJin Roh, Kai Ove Skaftnesmo, Dhamotharan Kannimuthu, Abdullah Sami Madhun, Sonal Patel, Bjørn Olav Kvamme, Hugh Craig Morton, Søren Grove
Veterinary research (VR) 55 p. 106
2024

Genomic and Transcriptomic Diversification of Flagellin Genes Provides Insight into Environmental Adaptation and Phylogeographic Characteristics in Aeromonas hydrophila

HyeongJin Roh, Dhamotharan Kannimuthu
Microbial Ecology 87
2023

Experimental transmission of piscine orthoreovirus-1 (PRV-1) in different life stages of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta)

Dhamotharan Kannimuthu, HyeongJin Roh, Hugh Craig Morton, Ma Michelle Demogina Penaranda, Anne Vossgård, Tom Johnny Hansen, Per Gunnar Fjelldal, Egil Erlingsson Karlsbakk, Ingrid Uglenes Fiksdal, Maria Dahle, Hakon Schau Berg-Rolness, Stig Mæhle, Dawit Berhe Ghebretnsae, Joachim Nordbø, Sonal Patel, Abdullah Sami Madhun, Søren Grove, Bjørn Olav Kvamme
Frontiers in Marine Science 10
2023

Nucleic acid amplification-based methods for diagnosis of shrimp viral diseases

Yoonhang Lee, Jasna Vijayan, HyeongJin Roh, Jiyeon Park, Ju-Yeop Lee, Thanh Luan Nguyen, Hyoung Jun Kim, Wi-Sik Kim, Arun K. Dhar, Chan-Il Park, Do-Hyung Kim
Reviews in Aquaculture
2023

Assessments of epidemic spread in aquaculture: comparing different scenarios of infectious bacteria incursion through spatiotemporal hybrid modeling

HyeongJin Roh, Dhamotharan Kannimuthu
Frontiers in Veterinary Science 10
2023

Comparative resistome analysis of Aeromonas species in aquaculture reveals antibiotic resistance patterns and phylogeographic distribution

HyeongJin Roh, Dhamotharan Kannimuthu
Environmental Research 239
2023

Long-term persistence of piscine orthoreovirus-1 (PRV-1) infection during the pre-smolt stages of Atlantic salmon in freshwater

Dhamotharan Kannimuthu, HyeongJin Roh, Ma Michelle Demogina Penaranda, Øystein Wessel, Stig Mæhle, Dawit Berhe Ghebretnsae, Joachim Nordbø, Bjørn Olav Kvamme, Hugh Craig Morton, Søren Grove
Veterinary research (VR) 54 p. 69
2023

Experimental transmission of piscine orthoreovirus-1 (PRV-1) in different life stages of Atlantic salmon (Salmo salar) and brown trout (Salmo trutta)

Dhamotharan Kannimuthu, HyeongJin Roh, Hugh Craig Morton, Ma Michelle Demogina Penaranda, Anne Vossgård, Tom Johnny Hansen, Per Gunnar Fjelldal, Egil Erlingsson Karlsbakk, Ingrid Uglenes Fiksdal, Maria Dahle, Håkon Berg-Rolness, Stig Mæhle, Dawit Berhe Ghebretnsae, Joachim Nordbø, Sonal Patel, Abdullah Sami Madhun, Søren Grove, Bjørn Olav Kvamme
Frontiers in Marine Science 10
2022

A genome-wide association study of the occurrence of genetic variations in Edwardsiella piscicida, Vibrio harveyi, and Streptococcus parauberis under stressed environments

Roh, HyeongJin
Journal of Fish Diseases 45 p. 1373-1388
2022

Acute stress response on Atlantic salmon: a time-course study of the effects on plasma metabolites, mucus cortisol levels, and head kidney transcriptome profile

Angelico Madaro, Jonatan Nilsson, Paul Whatmore, HyeongJin Roh, Søren Grove, Lars Helge Stien, Rolf Erik Olsen
2022

A genome‐wide association study of the occurrence of genetic variations in Edwardsiella piscicida, Vibrio harveyi, and Streptococcus parauberis under stressed environments.

Roh, H.
Journal of Fish Diseases volume 45, Issue 9 p. 1373-1388
2022

Identification and characterization of warm temperature acclimation proteins (Wap65s) in rainbow trout (Oncorhynchus mykiss).

Roh, H., Park, J., Park, J., Kim, B. S., Park, C. I., & Kim, D. H.
Developmental & Comparative Immunology 135 p. 104475
2022

Hepcidin-1 in olive flounder (Paralichthys olivaceus): Gene expression, antimicrobial and therapeutic effects of synthetic peptides against bacterial and viral infections.

Lee, Y., Kim, N., Roh, H., Park, J., Kim, M., Lee, J., & Kim, D. H.
Aquaculture 560 p. 738480
2022

Eukaryotic and prokaryotic microbiome profiles of incoming seawater treated with electrolytic mixed oxidants used in a land-based fish farm.

Roh, H., Kim, N., Lee, Y., Park, J. O., Kim, Y. J., Kim, K. H., ... & Kim, D. H.
Aquaculture 549 p. 737728
2022

Identification, classification and functional characterization of HSP70s in rainbow trout (Oncorhynchus mykiss) through multi-omics approaches.

Roh, H., & Kim, D. H.
Fish & Shellfish Immunology 121 p. 205-214
2021

The Complete Genome of Nocardia seriolae MH196537 and Intra-Species Level as Analyzed by Comparative Genomics Based on Random Forest Algorithm

Bo Seong Kim, Min Do Huh, HyeongJin Roh
Current Microbiology 78 p. 2391-2399
2021

Dual-Organ Transcriptomic Analysis of Rainbow Trout Infected With Ichthyophthirius multifiliis Through Co-Expression and Machine Learning

HyeongJin Roh, Nameun Kim, Yoonhang Lee, Jiyeon Park, Bo Seong Kim, Mu Kun Lee, Chan-Il Park, Do-Hyung Kim
Frontiers in Immunology 12 p. 1-14
2021

Dual-Organ Transcriptomic Analysis of Rainbow Trout Infected With Ichthyophthirius multifiliis Through Co-Expression and Machine Learning

Roh H., Kim N., Lee Y., Park J., Kim B.S., Lee M.K., Park C-I. & Kim D-H.
Frontiers in Immunology 12 p. 2323
2021

Genotypic and Phenotypic Characterization of Highly Alkaline-Resistant Carnobacterium maltaromaticum V-Type ATPase from the Dairy Product Based on Comparative Genomics

Roh H. & Kim D-H.
Microorganisms 9(6) p. 1233
2021

The Complete Genome of Nocardia seriolae MH196537 and Intra‑Species Level as Analyzed by Comparative Genomics Based on Random Forest Algorithm

Kim B.S., Heo M.D. & Roh H.
Current Microbiology 78(6) p. 2391-2399
2021

Transcriptome analysis unveils survival strategies of Streptococcus parauberis against fish serum

Lee Y., Kim N., Roh H., Kim A., Han H-J., Cho M. & Kim D-H.
PLoS ONE 16(5) p. e0252200
2021

Differential proteome profile of gill and spleen in three pathogen-infected Paralichthys olivaceus

Lee A-R., Kim H., Jeon K-Y., Ko E-J., Kim A., Kim N., Roh H., Lee Y., Park J., Kim D-H., Choi Y.H., Kim K., Kim H-S., Ock M. & Cha H-J.
Genes and Genomics 43(1) p. 701-712
2021

Cell proliferation and wound healing effects of LEDs in the olive flounder, Paralichthys olivaceus

Roh H., Kim B.S., Kang G. & D-H. Kim
Aquaculture 535 p. 736344
2021

Complete Genome Analysis of Flavobacterium psychrophilum Strain FPRT1, Isolated from Diseased Rainbow Trout ( Oncorhynchus mykiss ) in South Korea

Park J., Roh H., Lee Y., Park J. & Kim D-H.
Microbiology Resource Announcements 10(12) p. e00151-21
2021

Complete Genome Sequence of Aeromonas salmonicida subsp. masoucida Strain BR19001YR, Isolated from Diseased Korean Rockfish (Sebastes schlegelii)

Kang Y-R., Kim A., Lee Y., Kim N., Roh H. & Kim D-H.
Microbiology Resource Announcements 10(3) p. e01281-20
2020

Multi-Omics Analysis Provides Novel Insight into Immuno-Physiological Pathways and Development of Thermal Resistance in Rainbow Trout Exposed to Acute Thermal Stress.

Roh H., Kim A., Kim N., Lee Y. & Kim D-H.
International Journal of Molecular Sciences 21(23) p. 9198
2020

Genome-wide comparison of Carnobacterium maltaromaticum derived from diseased fish harbouring important virulence-related genes

Roh H., Kim B.S., Lee M.K., Park C-I. & Kim D-H.
Journal of fish diseases 43(9) p. 1029-1037
2020

Overfeeding-Induced Obesity Could cause Potential Immuno-Physiological Disorders in Rainbow Trout (Oncorhynchus mykiss)

Roh H., Park J., Kim A., Kim N., Lee Y., Kim B.S., Vijayan J., Lee M.K, Park C-I & Kim D-H
Animals 10(9) p. 1499
2020

Genome‐wide comparison of Carnobacterium maltaromaticum derived from diseased fish harbouring important virulence‐related genes.

Roh, H., Kim, B. S., Lee, M. K., Park, C. I., & Kim, D. H.
Journal of Fish Diseases
2020

Changes in hematoserological profiles and leukocyte redistribution in rainbow trout (Oncorhynchus mykiss) under progressive hypoxia.

Roh, H., Kim, B. S., Kim, A., Kim, N., Lee, M. K., Park, C. I., & Kim, D. H.
Journal of fish pathology 33 p. 23-34
2020

Genome based quantification of VHSV in multiple organs of infected olive flounder (Paralichthys olivaceus) using real-time PCR.

Kim, H., Baek, K. W., Ko, E. J., Luan, N. T., Lim, Y., Roh, H. J., Kim, N., Kim, D.H., Kim, A., Choi, Y.H., Kim S., Kim, H.S., Ock, M.S. & Cha, H.J.
Genes & Genomics
2020

Effect of blue light emitting diode on viral hemorrhagic septicemia in olive flounder (Paralichthys olivaceus).

Ho, D. T., Kim, A., Kim, N., Roh, H. J., Chun, W. K., Lee, Y., & Kim, D. H.
Aquaculture 521 p. 735019
2020

Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV)

Kim, A., Yoon, D., Lim, Y., Roh, H. J., Kim, S., Park, C. I., Kim, H.S., Cha, H.J., Choi, Y.H. & Kim, D. H.
2020 21
2019

Whole‐genome analysis of multi‐drug‐resistant Aeromonas veronii isolated from diseased discus (Symphysodon discus) imported to Korea.

Roh H.J., Kim, B., Kim, A., Kim, N.E., Lee, Y., Chun, W., Ho, T.D. & Kim, D.H.
Journal of Fish Diseases 42 p. 147-153
2019

Genome based quantification of Miamiensis avidus in multiple organs of infected olive flounder (Paralichthys olivaceus) by real-time PCR.

Kim H., Baek, K., Kim, A., Luan, N.T., Lim, Y., Roh, H.J., Kim, N., Kim, D., Choi, Y.H. & Kim, S.
Genes & genomics
2019

Epidemiological Cut-off Values Generated for Disc Diffusion Data from Streptococcus parauberis.

Chun W.K., Lee, Y.H., Kim, Y.J., Roh, H.J., Kim, A., Kim, N., Seo, J.S., Kwon, M.G., Lee, J.H. & Kim, D.H.
Korean J Fish Aquat Sci 52 p. 450-455
2019

Administration of antibiotics can cause dysbiosis in fish gut.

Kim A., Kim, N., Roh, H.J., Chun, W.K., Ho, D.T., Lee, Y. & Kim, D.H.
Aquaculture
2018

Distribution of Indicator Bacteria in Seawater off the Coasts of Jeju Island and Pohang in 2017.

Roh H.J., Kim, N.E., Chun, W., Kim, A., Lee, Y., Kim, Y., Hwang, J. & Kim, D.
Korean J Fish Aquat Sci 51 p. 697-703
2018

Blue light-emitting diode photoinactivation inhibits edwardsiellosis in fancy carp (Cyprinus carpio).

Roh H.J., Kang, G.S., Kim, A., Kim, N.E., Nguyen, T.L. & Kim, D.H.
Aquaculture 483 p. 1-7
2018

Distribution of indicator bacteria in seawater off the coast of Jeju Island.

Roh H.J., Lim, Y., Kim, A., Kim, N., Kim, Y., Park, N., Hwang, J., Kwon, M. & Kim, D.H.
Korean J Fish Aquat Sci 51 p. 450-455
2018

Blue light-emitting diode light at 405 and 465 nm can inhibit a Miamiensis avidus infection in olive flounder, Paralichthys olivaceus.

Roh H.J., Kim, A., Kang, G.S., Kim, B.S. & Kim, D.H.
Aquaculture 493 p. 176-185
2018

A comparison of genotypic and phenotypic methods for analyzing the susceptibility to sulfamethoxazole and trimethoprim in Edwardsiella piscicida.

Kim A., Lim, Y., Kim, N., Luan Nguyen, T., Roh, H.J., Park, C., Han, H., Jung, S., Cho, M. & Kim, D.
Microbial Drug Resistance 24 p. 1226-1235
2018

Complete Genome Sequence of Multiple-Antibiotic-Resistant Streptococcus parauberis Strain SPOF3K, Isolated from Diseased Olive Flounder (Paralichthys olivaceus)

Lee Y., Nguyen, T.L., Kim, A., Kim, N., Roh, H.J., Han, H.J., Jung, S.H., Cho, M.Y., Kang, H.Y. & Kim, D.H.
Genome announcements 6
2018

First report of nocardia infection in cultured Japanese eel, Anguilla japonica.

Kim B.S., Park, J.W., Kang, G.S., Jin, J.H., Roh, H.J., Kim, D.H., Lee, M.K. & Huh, M.D.
Journal of Fish Diseases 41 p. 1921-1927
2018

Dietary probiotic effect of Lactococcus lactis WFLU12 on low-molecular-weight metabolites and growth of olive flounder (Paralichythys olivaceus).

Nguyen T.L., Chun, W., Kim, A., Kim, N., Roh, H.J., Lee, Y., Yi, M., Park, C. & Kim, D.H
Frontiers in microbiology 9
2018

A case report of farmed olive flounder Paralichthys olivaceus infected with Myxosporean Parvicapsula anisocaudata.

Kim N.E., Kim, A., Roh, H.J., Gang, K.S. & Kim, D.H.
J. Fish Pathol. 31 p. 123-129
2017

Molecular identification of a possible causative agent of stomach distension syndrome in rainbow trout Onchorhynchus mykiss.

Roh H.J. & Kim, D.H
Korean J Fish Aquat Sci 50 p. 624-629
2017

Genome based quantification of Streptococcus parauberis in multiple organs of infected olive flounder (Paralichthys olivaceus).

Kim H., Kim, A., Kim, S.M., Nguyen, T.L., Lim, Y., Roh, H.J., Kim, N., Kim, D., Choi, Y.H. & Kim, S.
Genes & Genomics 39 p. 897-902
2016

Photoinactivation of major bacterial pathogens in aquaculture.

Roh H.J., Kim, A., Kang, G.S. & Kim, D.H
Fisheries and Aquatic Sciences 19
2016

Epidemiological cut-off values for disc diffusion data generated by standard test protocols from Edwardsiella tarda and Vibrio harveyi.

Lim Y., Kim, D., Roh, H.J., Park, M., Park, C. & Smith, P.
Aquaculture International 24 p. 1153-1161
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