Tomasz Furmanek
Publications
Academic articles
2022
Heterochiasmy and the establishment of gsdf as a novel sex determining gene in Atlantic halibut
PLoS Genetics
18
2022
Full production cycle performance of gene-edited, sterile Atlantic salmon - growth, smoltification, welfare indicators and fillet composition
Aquaculture
560
2022
Quantitative proteome profiling reveals molecular hallmarks of egg quality in Atlantic halibut: impairments of transcription and protein folding impede protein and energy homeostasis during early development
BMC Genomics
23
2022
Photoreception and transcriptomic response to light during early development of a teleost with a life cycle tightly controlled by seasonal changes in photoperiod
PLoS Genetics
18
2021
The salmon louse genome: Copepod features and parasitic adaptations
Genomics
113
p. 3666-3680
2021
Insulin-like 3 affects zebrafish spermatogenic cells directly and via Sertoli cells
Communications Biology
4
p. 1-13
2021
Cardiac dysfunction affects eye development and vision by reducing supply of lipids in fish
Science of the Total Environment
800
2021
Illuminating the planktonic stages of salmon lice: A unique fluorescence signal for rapid identification of a rare copepod in zooplankton assemblages
Journal of Fish Diseases
2020
ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species
Frontiers in Molecular Biosciences
7
p. 345
2020
Comparison of anadromous and landlocked Atlantic salmon genomes reveals signatures of parallel and relaxed selection across the Northern Hemisphere
Evolutionary Applications
p. 1-16
2020
Transcriptomic analysis of dead end knockout testis reveals germ cell and gonadal somatic factors in Atlantic salmon
BMC Genomics
21
p. 1-15
2020
Proteomic profiling of salmon skin mucus for the comparison of sampling methods
Journal of chromatography. B
1138
2019
Comparative transcriptome analysis of trout skin pigment cells
BMC Genomics
20
p. 1-15
2018
Vgll3 and the Hippo pathway are regulated in Sertoli cells upon entry and during puberty in Atlantic salmon testis
Scientific Reports
8:1912
p. 1-11
2018
Transcriptome-wide mapping of signaling pathways and early immune responses in lumpfish leukocytes upon in vitro bacterial exposure
Scientific Reports
8:5261
p. 1-14
2017
Integrative testis transcriptome analysis reveals differentially expressed miRNAs and their mRNA targets during early puberty in Atlantic salmon
BMC Genomics
18
2017
bmp15l, figla, smc1bl, and larp6l are preferentially expressed in germ cells in Atlantic salmon (Salmo salar L.)
Molecular Reproduction and Development
84
p. 76-87
2017
Novel adverse outcome pathways revealed by chemical genetics in a developing marine fish
eLIFE
6:e20707
p. 1-30
2016
Developmental transcriptomics in Atlantic haddock: Illuminating pattern formation and organogenesis in non-model vertebrates
Developmental Biology
411
p. 301-313
2016
First feed affects the expressions of microRNA and their targets in Atlantic cod
British Journal of Nutrition
115
p. 1145-1154
2016
Atlantic salmon populations reveal adaptive divergence of immune related genes - A duplicated genome under selection
BMC Genomics
17:610
p. 1-12
2016
The two-step development of a duplex retina involves distinct events of cone and rod neurogenesis and differentiation
Developmental Biology
416
p. 389-401
2016
Expression profiling identifies Sertoli and Leydig cell genes as Fsh targets in adult zebrafish testis
Molecular and Cellular Endocrinology
437
p. 237-251
2015
The vgll3 Locus Controls Age at Maturity in Wild and Domesticated Atlantic Salmon(Salmo salar L.) Males
PLoS Genetics
11:e1005628
2015
A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species
Molecular Reproduction and Development
82
p. 397-404
2015
Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae
Redox Biology
5
p. 308-318
2014
Global transcriptome analysis identifies regulated transcripts and pathways activated during oogenesis and early embryogenesis in atlantic cod
Molecular Reproduction and Development
81
p. 619-635
2014
Gene expression in five salmon louse (Lepeophtheirus salmonis, Krøyer 1837) tissues
Marine Genomics
18
p. 39-44
2014
Transcriptome sequencing of Atlantic salmon (Salmo salar L.) notochord prior to development of the vertebrae provides clues to regulation of positional fate, chordoblast lineage and mineralisation
BMC Genomics
15:141
2013
Mineralization of the vertebral bodies in Atlantic salmon (Salmo salar L.) is initiated segmentally in the form of hydroxyapatite crystal accretions in the notochord sheath
Journal of Anatomy
223
p. 159-170
2013
Genomic divergence between the migratory and stationary ecotypes of Atlantic cod
Molecular Ecology
22
p. 5098-5111
2013
Increasing Sequence Search Sensitivity with Transitive Alignments
PLOS ONE
8
2012
Maternal 3 ' UTRs: from egg to onset of zygotic transcription in Atlantic cod
BMC Genomics
13
2012
Differential expression patterns of conserved miRNAs and isomiRs during Atlantic halibut development
BMC Genomics
13
2011
Developmentally regulated expression of intracellular Fgf11-13, hormone-like Fgf15 and canonical Fgf16,-17 and-20 mRNAs in the developing mouse molar tooth
Acta Odontologica Scandinavica
69
p. 360-366
2011
RNA deep sequencing of the Atlantic cod transcriptome
Comparative Biochemistry and Physiology - Part D:Genomics and Proteomics
6
p. 18-22
2009
Large-scale sequence analyses of Atlantic cod
New Biotechnology
25
p. 263-271
2009
Large-scale sequence analyses of Atlantic cod
New Biotechnology
25
p. 263-271
2008
Secondary induction and the development of tooth nerve supply
Annals of Anatomy
190
p. 178-187
2008
Vesicular release of glutamate from hippocampal neurons in culture: an immunocytochemical assay
Experimental Brain Research
184
p. 479-492
2007
Fgfr2b mediated epithelial-mesenchymal interactions coordinate tooth morphogenesis and dental trigeminal axon patterning
Mechanisms of Development
124
p. 868-883
2005
Coordination of trigeminal axon navigation and patterning with tooth organ formation: epithelial-mesenchymal interactions, and epithelial Wnt4 and Tgfβ1 regulate semaphorin 3a expression in the dental mesenchyme
Development
132
p. 323-334
2005
Large-scale enhancer detection in the zebrafish genome
Development
132
p. 3799-3811
2005
Dynamic expression of Wnt signaling-related Dickkopf1,-2, and-3 mRNAs in the developing mouse tooth
Developmental Dynamics
233
p. 161-166
2003
Identification of a novel putative signaling center, the tertiary enamel knot in the postnatal mouse molar tooth
Mechanisms of Development
120
p. 270-276
2003
Identification of a novel putative signaling center, the tertiary enamel knot in the postnatal mouse molar tooth
Mechanisms of Development
120
p. 270-276
Scientific lectures
2024
Analysing large amounts of echosounder data using cloud based data access combined with deep learning models
2024
Fisheries acoustics and deep learning
2023
A story about data extraction and deep learning applied to fishery acoustic data
2022
Insights into the modulation of pigmentation and eye migration in farmed Atlantic halibut (Hippoglossus hippoglossus)
2022
Towards a greater understanding of crude oil induced eye abnormalities
2022
Developing and deploying machine learning methods for acoustic data
2022
Photoreception and transcriptome response to light during early development of Atlantic salmon (Salmon salar)
2021
Ontogenetic shift and lateralized swimming behavior in Atlantic halibut (Hippoglossus hippoglossus)
2020
Hva er de genetiske forskjellene mellom ferskvannslaks og anadrom laks?.
2019
Genomic regions under selection in landlocked Atlantic salmon. International Conference on Integrative Salmonid Biology
2019
Genomic regions under selection in landlocked Atlantic salmon
2018
Susceptibility to salmonid alphavirus (SAV) of different salmon breed lines.
2018
Hvordan fungerer laksens pubertetsgen?
2018
The interbrancheal lymphoid tissue (ILT) of salmonid fish: How to be classified?
2018
Det interbrankiale lymfoide vevet, et unikt lymfoid vev i gjelle hos Atlantisk laks
2018
Transkriptom analyser avdekker rognkjeksens tidlige immunresponser og gir innblikk i evolusjonshistorien.
2018
RNA-Seq reveals novel impacts of PAHs on excitation-transcription coupling in cardiomyocytes
2017
A comparative study of diploid and triploid Atlantic salmon post-smolts upon SAV-3 bath challenge and their immune transcriptomatic responses
2017
RNA-Seq reveals novel impacts of PAHs on excitation-transcription coupling in cardiomyocytes
2016
Targeting germ cell survival factors to produce sterile salmon
2016
Targeting germ cell survival factors to produce sterile salmon through vaccination
2016
Sterile salmon by targeting factors involved in germ cell survival: novel strategies for sustainable fish farming
2016
Targeted mutagenesis in Atlantic salmon using the CRISPR/Cas9 system
2016
Bruk av CRISPR/Cas9 i laks
2016
Genome resequencing of geographically distinct Atlantic Salmon (Salmo salar) populations reveals adaptive divergence
2016
Adaptive plasticity in Atlantic salmon- genetic predisposition of time at maturity and environmental triggers
2016
Transcriptomics identifies novel adverse outcome pathways from crude oil exposure in haddock early life history stages
2016
Transcriptomics identifies novel adverse outcome pathways from crude oil exposure in haddock early life history stages
2014
Transkriptomanalyse av atlantisk torsk - mekanismer for rask vekst
2013
GLOBAL TRANSCRIPTOME ANALYSIS IDENTIFIES REGULATED TRANSCRIPTS AND PATHWAYS ACTIVATED DURING OOGENESIS AND EARLY EMBRYOGENESIS IN ATLANTIC COD
2013
DEEP SEQUENCING REVEALS MINERALIZING NOTOCHORD TRANSCRIPTOME, DURING AXIAL SKELETON ENFORCEMENT FROM NOTOCHORD TO VERTEBRA IN ATLANTIC SALMON (SALMO SALAR L.)
2013
GLOBAL AND LOCAL METHYLATION PATTERN IN TRIPLOID AND DIPLOID AND TRIPLOID ATLANTIC SALMON
2013
TRANSCRIPTOMIC ANALYSIS OF DEVELOPING ATLANTIC COD - UNDERSTANDING THE MECHANISMS UNDERLYING HIGH GROWTH
2012
The Atlantic salmon (Salmo Salar L.) notochord displays a dynamic transcriptome prior to and during vertebral segmentation
2012
Transcriptomic analysis of the salmon louse
2012
The Salmon Louse Genome Project
2001
Angiostatin-release from optimized alginate microcapsules
2001
Angiostatin release from alginate encapsulated 293-cells
2001
Cell encapsulation in cancer therapy
2001
Cell encapsulation in cancer therapy
2000
Lynkurs i Flash
2000
Nettkollokvering og orakeltjeneste
Poster
2021
Ontogenetic shift and lateralized behavior in Atlantic halibut (Hippoglossus hippoglossus)
2021
Long-term performance of gene edited, sterile Atlantic salmon - growth, smoltification, welfare indicators and fillet composition.
2018
VGLL3 AND THE HIPPO PATHWAY ARE REGULATED IN SERTOLI CELLS UPON ENTRY AND DURING PUBERTY IN ATLANTIC SALMON TESTIS.
2018
Features of the interbrancheal lymphoid tissue (ILT) in the Atlantic salmon
2015
Diet affects the redox system in developing Atlantic cod (Gadus morhua) larvae
2015
SCREENING FOR STERILITY CANDIDATE GENES IN ATLANTIC SALMON (SALMO SALAR)
2014
SMALL RNAS IN IMMATURE AND MATURE TESTIS OF ATLANTIC SALMON (SALMO SALAR L.)
2011
SMALLRNAS IN ATLANTIC HALIBUT (Hippoglossus hippoglossus L.)
2011
Investigating miRNAs and transcriptomes at our local SOLiD sequencing facility
2010
MicroRNA profiling using Solid 3 platform during early development of Atlantic halibut (Hippoglossus hippoglossus)
Reports and dissertations
2003
3D visualization and quantification of viability and gene expression in thick tissue samples
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